Books & book chapters

Contents

Books & book chapters#

Books#

  1. Novel Methods in Soft Matter Simulations. Karttunen, Mikko; Vattulainen, Ilpo; Lukkarinen, Ari (Eds.). Springer-Verlag, Lecture Notes in Physics series (2004).
    https://doi.org/10.1007/b95265
    Contents:

    • Applications of Dissipative Particle Dynamics, Robert D. Groot

    • Simulating the Dynamics of Mesoscopic Systems, Christopher P. Lowe, Menno W. Dreischor

    • Statistical Mechanics of Coarse-Graining, Pep Español

    • Mesoscopic Multi-particle Collision Model for Fluid Flow and Molecular Dynamics, Anatoly Malevanets, Raymond Kapral

    • Molecular Dynamics of Complex Systems: Non-Hamiltonian, Constrained, Quantum-Classical, Giovanni Ciccotti, Galina Kalibaeva

    • Hybrid Models: Bridging Particle and Continuum Scales in Hydrodynamic Flow Simulations, Eirik G. Flekkøy, Sean McNamara, Knut Jørgen Måløy, Jens Feder, Geri Wagner

    • On the Reduction of Molecular Degrees of Freedom in Computer Simulations, Alexander P. Lyubartsev, Aatto Laaksonen

    • Computer Simulations of the Electric Double Layer, André G. Moreira, Roland R. Netz

    • Lattice Boltzmann Modeling of Complex Fluids: Colloidal Suspensions and Fluid Mixtures, Ignacio Pagonabarraga

    • Reverse Non-equilibrium Molecular Dynamics, Florian Müller-Plathe, Patrice Bordat

    • Coarse-Graining in Polymer Simulations, Séverine Girard, Florian Müller-Plathe

  2. From biomembranes to cationic liposomes. Int’l conference and summer school. Technical Report B26, ISBN 951-22-5429-8, Helsinki University of Technology, Lab. of Computational Engineering, Helsinki/Espoo, August 2001. Mikko Karttunen and Ilpo Vattulainen and Ari Lukkarinen (Eds.).

Book chapters#

  1. Electrostatic Fields in Biophysical Chemistry. Sowlati-Hashjin, Shahin; Karttunen, Mikko; Matta, Chérif F. Chapter 7, pp. 225-262 in Electric Fields and Structure-Reactivity Aspects: Combined Theoretical and Experimental Perspectives, Sason Shaik and Thijs Stuyver (Eds.), RSC Publications, 2021.
    Article: https://doi.org/10.1039/9781839163043-00225
    Book: https://doi.org/10.1039/9781839163043

  2. Molecular dynamics simulation of surfactant monolayers, Bin Liu, Jirasak Wong-ekkabut, Mikko Karttunen, in “Computational Methods for Complex Liquid-Fluid Interfaces”, Rahni, Karbaschi, Miller (Eds.). Taylor & Francis (2015).
    Article: Chapter 11
    Book: https://doi.org/10.1201/b19337

  3. Molecular-scale computational techniques in interfacial science, Trang Nhu Do, Jari Jalkanen, Mikko Karttunen, in “Computational Methods for Complex Liquid-Fluid Interfaces”, Rahni, Karbaschi, Miller (Eds.). Taylor & Francis (2015).
    Article: Chapter 6
    Book: https://doi.org/10.1201/b19337

  4. Long Molecular Dynamics Simulations of Intrinsically Disordered Proteins Reveal Preformed Structural Elements for Target Binding. Cino, Elio, A.; Karttunen, Mikko; Choy, Wing-Yiu. In Computational Approaches to Protein Dynamics - From Quantum to Coarse-Grained Methods (Taylor & Francis), M. Fuxreiter (Ed.).
    Article: Chapter 8
    Book: https://doi.org/10.1201/b17979
    Article at Research Gate

  5. Classical Molecular Dynamics in a Nutshell. Hug, Susanna. Methods Mol. Biol. 924, 127–152, (2013). In: Monticelli, L., Salonen, E. (eds) Biomolecular Simulations. Methods in Molecular Biology, vol 924. Humana Press, Totowa, NJ
    Article: https://doi.org/10.1007/978-1-62703-017-5_6
    Book: https://doi.org/10.1007/978-1-62703-017-5

  6. Systematic Approach to Coarse-Graining of Molecular Descriptions and Interactions with Applications to Lipid Membranes. Murtola, Teemu; Vattulainen, Ilpo; Karttunen, Mikko. In Coarse-Graining of Condensed Phase and Biomolecular Systems. Gregory A. Voth (Ed.). CRC Press, Boca Raton, FL.
    Article: Chapter 7
    Book: https://doi.org/10.1201/9781420059564
    Article at Research Gate

  7. Modeling of biologically motivated soft matter systems. Vattulainen Ilpo; Karttunen, Mikko. Handbook of Theoretical and Computational Nanotechnology, edited by M. Rieth and W. Schommers (American Scientific Publishers).
    Chapter

Contents